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LOC127518848 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like [ Ctenopharyngodon idella (grass carp) ]

Gene ID: 127518848, updated on 23-Nov-2023

Summary

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Gene symbol
LOC127518848
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Ctenopharyngodon idella
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Ctenopharyngodon
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Genomic context

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See LOC127518848 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_02 current HZGC01 (GCF_019924925.1) 9 NC_067228.1 (449016..454989, complement)

Chromosome 9 - NC_067228.1Genomic Context describing neighboring genes Neighboring gene endothelin receptor type Bb Neighboring gene uncharacterized LOC127518847 Neighboring gene uncharacterized LOC127518782 Neighboring gene lactose-binding lectin l-2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067228.1 Chromosome 9 Reference HZGC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_019924925.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HZGC01 Primary Assembly

Genomic

  1. NC_067228.1 Reference HZGC01 Primary Assembly

    Range
    449016..454989 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051906060.1 → XP_051762020.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases