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traf2b Tnf receptor-associated factor 2b [ Ctenopharyngodon idella (grass carp) ]

Gene ID: 127513416, updated on 6-Jun-2024

Summary

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Gene symbol
traf2b
Gene description
Tnf receptor-associated factor 2b
Gene type
protein coding
RefSeq status
MODEL
Organism
Ctenopharyngodon idella
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Ctenopharyngodon
Also known as
TRAF2
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_02 current HZGC01 (GCF_019924925.1) 5 NC_067224.1 (10353641..10381028, complement)

Chromosome 5 - NC_067224.1Genomic Context describing neighboring genes Neighboring gene aminolevulinate dehydratase Neighboring gene uncharacterized LOC127513421 Neighboring gene F-box and WD repeat domain containing 5 Neighboring gene uncharacterized LOC127513422 Neighboring gene coenzyme Q4 homolog (S. cerevisiae) Neighboring gene B-box and SPRY domain containing

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067224.1 Chromosome 5 Reference HZGC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular identification and expression analysis of tumor necrosis factor receptor-associated factor 2 in grass carp Ctenopharyngodon idella. Xu Z, et al. Acta Biochim Biophys Sin (Shanghai), 2007 Nov. PMID 17989877

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in activation of NF-kappaB-inducing kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein autoubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TNF receptor-associated factor 2
Names
TNF receptor associated factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_019924925.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HZGC01 Primary Assembly

Genomic

  1. NC_067224.1 Reference HZGC01 Primary Assembly

    Range
    10353641..10381028 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051895170.1 → XP_051751130.1  TNF receptor-associated factor 2 isoform X2

    UniProtKB/TrEMBL
    A5X2W3

  2. XM_051895168.1 → XP_051751128.1  TNF receptor-associated factor 2 isoform X1

    UniProtKB/TrEMBL
    A5X2W3

  3. XM_051895171.1 → XP_051751131.1  TNF receptor-associated factor 2 isoform X3

    UniProtKB/TrEMBL
    A5X2W3

  4. XM_051895169.1 → XP_051751129.1  TNF receptor-associated factor 2 isoform X1

    UniProtKB/TrEMBL
    A5X2W3
Nucleotide Protein
Heading Accession and Version

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