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capn3a calpain 3a, (p94) [ Ctenopharyngodon idella (grass carp) ]

Gene ID: 127498978, updated on 24-Mar-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
Gene type
protein coding
RefSeq status
MODEL
Organism
Ctenopharyngodon idella
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Xenocyprididae; Xenocypridinae; Ctenopharyngodon
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 17
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_02 current HZGC01 (GCF_019924925.1) 17 NC_067236.1 (15230312..15254251)

Chromosome 17 - NC_067236.1Genomic Context describing neighboring genes Neighboring gene NADP-dependent oxidoreductase domain containing 1 Neighboring gene tau tubulin kinase 2a Neighboring gene glucosidase, alpha; neutral C Neighboring gene zinc finger protein 106a Neighboring gene proton activated chloride channel 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067236.1 Chromosome 17 Reference HZGC01 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_019924925.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HZGC01 Primary Assembly

Genomic

  1. NC_067236.1 Reference HZGC01 Primary Assembly

    Range
    15230312..15254251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051869008.1 → XP_051724968.1  calpain-3 isoform X1

  2. XM_051869009.1 → XP_051724969.1  calpain-3 isoform X2

  3. XM_051869010.1 → XP_051724970.1  calpain-3 isoform X3

  4. XM_051869011.1 → XP_051724971.1  calpain-3 isoform X4

RNA

  1. XR_007926013.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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