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LOC127429013 delta-sarcoglycan-like [ Myxocyprinus asiaticus (Chinese sucker) ]

Gene ID: 127429013, updated on 10-Apr-2024

Summary

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Gene symbol
LOC127429013
Gene description
delta-sarcoglycan-like
See related
EnsemblRapid:ENSMTCG00000014134
Gene type
protein coding
RefSeq status
MODEL
Organism
Myxocyprinus asiaticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Catostomoidei; Catostomidae; Myxocyprinus
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Genomic context

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See LOC127429013 in Genome Data Viewer
Location:
chromosome: 38
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_02 current UBuf_Myxa_2 (GCF_019703515.2) 38 NC_059381.1 (29278784..29430916)

Chromosome 38 - NC_059381.1Genomic Context describing neighboring genes Neighboring gene 39S ribosomal protein L22, mitochondrial-like Neighboring gene cytochrome c oxidase assembly factor 3 homolog, mitochondrial-like Neighboring gene rho GTPase-activating protein 7-like Neighboring gene arginine--tRNA ligase, cytoplasmic-like Neighboring gene ubiquitin-like domain-containing CTD phosphatase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059381.1 Chromosome 38 Reference UBuf_Myxa_2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_019703515.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UBuf_Myxa_2 Primary Assembly

Genomic

  1. NC_059381.1 Reference UBuf_Myxa_2 Primary Assembly

    Range
    29278784..29430916
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051677740.1 → XP_051533700.1  delta-sarcoglycan-like isoform X2

    Related
    ENSMTCP00000028748.1, ENSMTCT00000029634.1

  2. XM_051677738.1 → XP_051533698.1  delta-sarcoglycan-like isoform X1

    Related
    ENSMTCP00000028749.1, ENSMTCT00000029635.1

  3. XM_051677741.1 → XP_051533701.1  delta-sarcoglycan-like isoform X3

RNA

  1. XR_007895217.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases