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LOC127424422 host cell factor 1-like [ Myxocyprinus asiaticus (Chinese sucker) ]

Gene ID: 127424422, updated on 10-Apr-2024

Summary

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Gene symbol
LOC127424422
Gene description
host cell factor 1-like
See related
EnsemblRapid:ENSMTCG00000025585
Gene type
protein coding
RefSeq status
MODEL
Organism
Myxocyprinus asiaticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Catostomoidei; Catostomidae; Myxocyprinus
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Genomic context

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See LOC127424422 in Genome Data Viewer
Location:
chromosome: 33
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2023_02 current UBuf_Myxa_2 (GCF_019703515.2) 33 NC_059376.1 (39278444..39319538)

Chromosome 33 - NC_059376.1Genomic Context describing neighboring genes Neighboring gene methyl-CpG-binding protein 2-like Neighboring gene interleukin-1 receptor-associated kinase 1-like Neighboring gene GATA-binding factor 1-A-like Neighboring gene histone deacetylase 6-like Neighboring gene LHFPL tetraspan subfamily member 3 protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059376.1 Chromosome 33 Reference UBuf_Myxa_2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_019703515.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UBuf_Myxa_2 Primary Assembly

Genomic

  1. NC_059376.1 Reference UBuf_Myxa_2 Primary Assembly

    Range
    39278444..39319538
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051669614.1 → XP_051525574.1  host cell factor 1-like isoform X1

    Related
    ENSMTCP00000053284.1, ENSMTCT00000055572.1

  2. XM_051669615.1 → XP_051525575.1  host cell factor 1-like isoform X2

    Related
    ENSMTCP00000053281.1, ENSMTCT00000055569.1

  3. XM_051669620.1 → XP_051525580.1  host cell factor 1-like isoform X6

    Related
    ENSMTCP00000053283.1, ENSMTCT00000055571.1

  4. XM_051669621.1 → XP_051525581.1  host cell factor 1-like isoform X7

  5. XM_051669619.1 → XP_051525579.1  host cell factor 1-like isoform X5

  6. XM_051669622.1 → XP_051525582.1  host cell factor 1-like isoform X8

    Related
    ENSMTCP00000053282.1, ENSMTCT00000055570.1

  7. XM_051669623.1 → XP_051525583.1  host cell factor 1-like isoform X9

  8. XM_051669624.1 → XP_051525584.1  host cell factor 1-like isoform X10

  9. XM_051669616.1 → XP_051525576.1  host cell factor 1-like isoform X3

  10. XM_051669625.1 → XP_051525585.1  host cell factor 1-like isoform X11

  11. XM_051669618.1 → XP_051525578.1  host cell factor 1-like isoform X4

  12. XM_051669617.1 → XP_051525577.1  host cell factor 1-like isoform X4

    Related
    ENSMTCP00000053153.1, ENSMTCT00000055441.1
Nucleotide Protein
Heading Accession and Version

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