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c1galt1la core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like a [ Myxocyprinus asiaticus (Chinese sucker) ]

Gene ID: 127419167, updated on 10-Apr-2024

Summary

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Gene symbol
c1galt1la
Gene description
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like a
See related
EnsemblRapid:ENSMTCG00000045405
Gene type
protein coding
RefSeq status
MODEL
Organism
Myxocyprinus asiaticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Catostomoidei; Catostomidae; Myxocyprinus
Orthologs
zebrafish all
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Genomic context

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See c1galt1la in Genome Data Viewer
Location:
chromosome: 28
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_02 current UBuf_Myxa_2 (GCF_019703515.2) 28 NC_059371.1 (26651283..26661005)

Chromosome 28 - NC_059371.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 26 member 10 Neighboring gene beta-1,4 N-acetylgalactosaminyltransferase 1-like Neighboring gene tachykinin-3-like Neighboring gene zinc finger protein 385A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059371.1 Chromosome 28 Reference UBuf_Myxa_2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_019703515.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UBuf_Myxa_2 Primary Assembly

Genomic

  1. NC_059371.1 Reference UBuf_Myxa_2 Primary Assembly

    Range
    26651283..26661005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051660345.1 → XP_051516305.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-A

    Related
    ENSMTCP00000090508.1, ENSMTCT00000098006.1
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases