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LOC127411246 calpain-3-like [ Myxocyprinus asiaticus (Chinese sucker) ]

Gene ID: 127411246, updated on 10-Apr-2024

Summary

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Gene symbol
LOC127411246
Gene description
calpain-3-like
See related
EnsemblRapid:ENSMTCG00000006380
Gene type
protein coding
RefSeq status
MODEL
Organism
Myxocyprinus asiaticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Catostomoidei; Catostomidae; Myxocyprinus
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Genomic context

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See LOC127411246 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_02 current UBuf_Myxa_2 (GCF_019703515.2) 20 NC_059363.1 (34163403..34184939)

Chromosome 20 - NC_059363.1Genomic Context describing neighboring genes Neighboring gene NADP-dependent oxidoreductase domain-containing protein 1-like Neighboring gene tau-tubulin kinase 2-like Neighboring gene zinc finger protein 106-like Neighboring gene proton-activated chloride channel-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059363.1 Chromosome 20 Reference UBuf_Myxa_2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_019703515.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UBuf_Myxa_2 Primary Assembly

Genomic

  1. NC_059363.1 Reference UBuf_Myxa_2 Primary Assembly

    Range
    34163403..34184939
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051646664.1 → XP_051502624.1  calpain-3-like isoform X1

    Related
    ENSMTCP00000012753.1, ENSMTCT00000013259.1

  2. XM_051646665.1 → XP_051502625.1  calpain-3-like isoform X2

    Related
    ENSMTCP00000012756.1, ENSMTCT00000013262.1
Nucleotide Protein
Heading Accession and Version

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