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LOC127406729 H3K27ac hESC enhancer GRCh37_chr6:87866102-87866709 [ Homo sapiens (human) ]

Gene ID: 127406729, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127406729
Gene description
H3K27ac hESC enhancer GRCh37_chr6:87866102-87866709
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K27ac histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127406729 in Genome Data Viewer
Location:
chromosome: 6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (87156384..87156991)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (88365263..88365870)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (87866102..87866709)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene reticulocalbin 1 pseudogene 1 Neighboring gene translation initiation factor IF-2-like Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24792 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:87861807-87862307 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24793 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24794 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:87878407-87878908 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:87878909-87879408 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:87881659-87882500 Neighboring gene zinc finger protein 292 Neighboring gene RNA polymerase I subunit F pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:87891367-87892000 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:87919830-87920384 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:87921345-87922098 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:87922099-87922850 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:87922894-87924093 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17372 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:87967235-87967761 Neighboring gene uncharacterized LOC124901356 Neighboring gene gap junction protein beta 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_108700.1 

    Range
    101..708
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    87156384..87156991
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    88365263..88365870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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