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LOC127402967 H3K4me1 hESC enhancer GRCh37_chr5:61610189-61610690 [ Homo sapiens (human) ]

Gene ID: 127402967, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127402967
Gene description
H3K4me1 hESC enhancer GRCh37_chr5:61610189-61610690
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127402967 in Genome Data Viewer
Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (62314362..62314863)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (63133597..63134099)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900610 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:61306801-61307329 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:61339008-61339553 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:61339554-61340098 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:61370472-61371439 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:61457226-61457726 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:61457727-61458227 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:61458278-61458778 Neighboring gene RN7SK pseudogene 157 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16050 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:61532143-61532644 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:61532645-61533144 Neighboring gene CRISPRi-validated cis-regulatory element chr5.1488 Neighboring gene Sharpr-MPRA regulatory region 4645 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22594 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22595 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16051 Neighboring gene CREB regulated transcription coactivator 2 pseudogene Neighboring gene kinesin family member 2A Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22596 Neighboring gene DIM1 rRNA methyltransferase and ribosome maturation factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_104916.1 

    Range
    101..602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    62314362..62314863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    63133597..63134099
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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