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LOC127402176 H3K4me1 hESC enhancer GRCh37_chr5:526131-526763 [ Homo sapiens (human) ]

Gene ID: 127402176, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127402176
Gene description
H3K4me1 hESC enhancer GRCh37_chr5:526131-526763
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127402176 in Genome Data Viewer
Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (526016..526648)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (520438..521070)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (526131..526763)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:472032-472674 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:472675-473315 Neighboring gene SLC9A3 3' UTR overlapping transcript 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:475243-475883 Neighboring gene SLC9A3 antisense RNA 1 Neighboring gene solute carrier family 9 member A3 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_85959 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:496057-496580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:515297-515797 Neighboring gene uncharacterized LOC107986395 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:533845-534364 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:541448-542033 Neighboring gene microRNA 4456 Neighboring gene uncharacterized LOC105374606 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:556500-557000

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_104135.1 

    Range
    101..733
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    526016..526648
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187550.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    101923..102555 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    520438..521070
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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