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LOC127276177 H3K4me1 hESC enhancer GRCh37_chr2:236955459-236955962 [ Homo sapiens (human) ]

Gene ID: 127276177, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127276177
Gene description
H3K4me1 hESC enhancer GRCh37_chr2:236955459-236955962
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127276177 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (236046815..236047318)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (236536543..236537046)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (236955459..236955962)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 Neighboring gene uncharacterized LOC124907999 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236881395-236881894 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236908700-236909590 Neighboring gene Sharpr-MPRA regulatory region 6211 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236921919-236922882 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236934624-236935124 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236936185-236936684 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236943445-236944014 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236950928-236951839 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236950015-236950927 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236953845-236954624 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236954625-236955404 Neighboring gene VISTA enhancer hs921 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236970128-236970759 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236970760-236971390 Neighboring gene RNA, U7 small nuclear 127 pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:236979819-236980320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236982603-236983103 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236984110-236984614 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:236991437-236991936 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:236995415-236996056 Neighboring gene RNA, 7SL, cytoplasmic 204, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237014597-237015120 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237015121-237015644 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237017217-237017740 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237017741-237018264 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237028027-237028769 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237028770-237029512 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237035362-237035872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237037456-237038393 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237045311-237045811 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237044810-237045310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237064500-237065288 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237067303-237068123 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237068124-237068944 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237068945-237069764 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237069765-237070586 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:237070587-237071406 Neighboring gene VISTA enhancer hs249 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237072227-237073046 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:237075208-237076160 Neighboring gene GBX2 and ASB18 antisense RNA 1 Neighboring gene gastrulation brain homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_098021.1 

    Range
    101..604
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    236046815..236047318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    236536543..236537046
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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