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LOC127272933 H3K4me1 hESC enhancer GRCh37_chr2:27007325-27008094 [ Homo sapiens (human) ]

Gene ID: 127272933, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127272933
Gene description
H3K4me1 hESC enhancer GRCh37_chr2:27007325-27008094
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127272933 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (26784457..26785226)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (26826046..26826815)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (27007325..27008094)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:26919925-26920426 Neighboring gene potassium two pore domain channel subfamily K member 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:26929035-26929932 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:26932169-26933090 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:26933091-26934010 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:26946480-26947679 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:26960802-26961302 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:26961303-26961803 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:26965319-26965824 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:26972913-26973660 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:26975905-26976652 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:26976653-26977400 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:26977401-26978148 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:26981141-26981888 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:26981889-26982634 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15476 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11276 Neighboring gene solute carrier family 35 member F6 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15477 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11277 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15478 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15479 Neighboring gene MPRA-validated peak3629 silencer Neighboring gene centromere protein A Neighboring gene CDKN2A interacting protein N-terminal like pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_094784.1 

    Range
    101..870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    26784457..26785226
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    26826046..26826815
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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