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LOC127271814 H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:228108020-228108882 [ Homo sapiens (human) ]

Gene ID: 127271814, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127271814
Gene description
H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:228108020-228108882
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K27ac and H3K4me1 histone modifications. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127271814 in Genome Data Viewer
Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (227920319..227921181)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (227109340..227110202)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (228108020..228108882)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373289 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1901 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1902 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:227980229-227980892 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:227981557-227982220 Neighboring gene MPRA-validated peak748 silencer Neighboring gene serine protease 38 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:228073527-228074122 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:228074123-228074719 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:228083643-228084489 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:228087252-228087752 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:228088986-228089986 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:228101825-228101974 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:228102681-228103478 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:228103479-228104275 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:228107156-228108019 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:228114017-228114769 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:228117534-228118094 Neighboring gene Wnt family member 9A Neighboring gene negCOR silencer S7 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:228129831-228130733 Neighboring gene uncharacterized LOC124904533 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1903 Neighboring gene microRNA 5008

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_093665.1 

    Range
    101..963
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    227920319..227921181
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    227109340..227110202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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