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LOC127270779 H3K27ac hESC enhancer GRCh37_chr1:168147823-168148324 [ Homo sapiens (human) ]

Gene ID: 127270779, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127270779
Gene description
H3K27ac hESC enhancer GRCh37_chr1:168147823-168148324
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer is marked by the H3K27ac histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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Location:
chromosome: 1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (168178585..168179086)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (167530082..167530583)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene DDB1 and CUL4 associated factor 6 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:168025104-168025604 Neighboring gene Sharpr-MPRA regulatory region 7850 Neighboring gene GCSH pseudogene 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:168054775-168055275 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:168065654-168066154 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:168066155-168066655 Neighboring gene G protein-coupled receptor 161 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1542 Neighboring gene Sharpr-MPRA regulatory region 11959 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2057 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:168163898-168164682 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:168166417-168166917 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:168177413-168178005 Neighboring gene cytochrome c oxidase subunit NDUFA4-like Neighboring gene TOR signaling pathway regulator Neighboring gene ribosomal protein L34 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_092631.1 

    Range
    101..602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    168178585..168179086
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    167530082..167530583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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