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Dysf dysferlin [ Phodopus roborovskii (desert hamster) ]

Gene ID: 127235747, updated on 24-Mar-2024

Summary

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Gene symbol
Dysf
Gene description
dysferlin
Locus tag
PHOROB_LOCUS14455
Gene type
protein coding
RefSeq status
MODEL
Organism
Phodopus roborovskii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Phodopus
Orthologs
human mouse all
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Genomic context

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See Dysf in Genome Data Viewer
Location:
chromosome: Un
Exon count:
59
Annotation release Status Assembly Chr Location
RS_2023_02 current PHOROB (GCF_943737965.1) Unplaced Scaffold NW_026126571.1 (153275..336738)

NW_026126571.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 638 Neighboring gene cytochrome P450 26B1 Neighboring gene exocyst complex component 6B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026126571 Unplaced Scaffold Reference PHOROB Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in T-tubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macrophage activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monocyte activation involved in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in T-tubule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dysferlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_943737965.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PHOROB Primary Assembly

Genomic

  1. NW_026126571.1 Reference PHOROB Primary Assembly

    Range
    153275..336738
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051203114.1 → XP_051059071.1  dysferlin isoform X2

  2. XM_051203124.1 → XP_051059081.1  dysferlin isoform X10

  3. XM_051203126.1 → XP_051059083.1  dysferlin isoform X12

  4. XM_051203122.1 → XP_051059079.1  dysferlin isoform X8

  5. XM_051203130.1 → XP_051059087.1  dysferlin isoform X16

  6. XM_051203128.1 → XP_051059085.1  dysferlin isoform X14

  7. XM_051203134.1 → XP_051059091.1  dysferlin isoform X20

  8. XM_051203132.1 → XP_051059089.1  dysferlin isoform X18

  9. XM_051203137.1 → XP_051059094.1  dysferlin isoform X23

  10. XM_051203113.1 → XP_051059070.1  dysferlin isoform X1

  11. XM_051203119.1 → XP_051059076.1  dysferlin isoform X5

  12. XM_051203118.1 → XP_051059075.1  dysferlin isoform X4

  13. XM_051203125.1 → XP_051059082.1  dysferlin isoform X11

  14. XM_051203120.1 → XP_051059077.1  dysferlin isoform X6

  15. XM_051203115.1 → XP_051059072.1  dysferlin isoform X3

  16. XM_051203121.1 → XP_051059078.1  dysferlin isoform X7

  17. XM_051203129.1 → XP_051059086.1  dysferlin isoform X15

  18. XM_051203123.1 → XP_051059080.1  dysferlin isoform X9

  19. XM_051203127.1 → XP_051059084.1  dysferlin isoform X13

  20. XM_051203133.1 → XP_051059090.1  dysferlin isoform X19

  21. XM_051203131.1 → XP_051059088.1  dysferlin isoform X17

  22. XM_051203136.1 → XP_051059093.1  dysferlin isoform X22

  23. XM_051203135.1 → XP_051059092.1  dysferlin isoform X21

Nucleotide Protein
Heading Accession and Version

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