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Chpf chondroitin polymerizing factor [ Phodopus roborovskii (desert hamster) ]

Gene ID: 127226474, updated on 24-Mar-2024

Summary

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Gene symbol
Chpf
Gene description
chondroitin polymerizing factor
Locus tag
PHOROB_LOCUS8887
Gene type
protein coding
RefSeq status
MODEL
Organism
Phodopus roborovskii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Phodopus
Orthologs
human mouse all
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Genomic context

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See Chpf in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_02 current PHOROB (GCF_943737965.1) Unplaced Scaffold NW_026126460.1 (21224012..21228235, complement)

NW_026126460.1Genomic Context describing neighboring genes Neighboring gene GDP-mannose pyrophosphorylase A Neighboring gene acid sensing ion channel subunit family member 4 Neighboring gene transmembrane protein 198 Neighboring gene obscurin like cytoskeletal adaptor 1 Neighboring gene inhibin subunit alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026126460 Unplaced Scaffold Reference PHOROB Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_943737965.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PHOROB Primary Assembly

Genomic

  1. NW_026126460.1 Reference PHOROB Primary Assembly

    Range
    21224012..21228235 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051190524.1 → XP_051046481.1  chondroitin sulfate synthase 2

Nucleotide Protein
Heading Accession and Version

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