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Plec plectin [ Phodopus roborovskii (desert hamster) ]

Gene ID: 127225675, updated on 24-Mar-2024

Summary

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Gene symbol
Plec
Gene description
plectin
Locus tag
PHOROB_LOCUS8267
Gene type
protein coding
RefSeq status
MODEL
Organism
Phodopus roborovskii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Phodopus
Orthologs
human mouse all
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Genomic context

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See Plec in Genome Data Viewer
Location:
chromosome: Un
Exon count:
41
Annotation release Status Assembly Chr Location
RS_2023_02 current PHOROB (GCF_943737965.1) Unplaced Scaffold NW_026126459.1 (1139268..1199607, complement)

NW_026126459.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127225680 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene poly(ADP-ribose) polymerase family member 10 Neighboring gene glutamate ionotropic receptor NMDA type subunit associated protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026126459 Unplaced Scaffold Reference PHOROB Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables keratin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in wound healing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in keratin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plectin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_943737965.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PHOROB Primary Assembly

Genomic

  1. NW_026126459.1 Reference PHOROB Primary Assembly

    Range
    1139268..1199607 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051189164.1 → XP_051045121.1  plectin isoform X3

  2. XM_051189165.1 → XP_051045122.1  plectin isoform X4

  3. XM_051189174.1 → XP_051045131.1  plectin isoform X12

  4. XM_051189171.1 → XP_051045128.1  plectin isoform X9

  5. XM_051189175.1 → XP_051045132.1  plectin isoform X13

  6. XM_051189162.1 → XP_051045119.1  plectin isoform X1

  7. XM_051189163.1 → XP_051045120.1  plectin isoform X2

  8. XM_051189176.1 → XP_051045133.1  plectin isoform X14

  9. XM_051189173.1 → XP_051045130.1  plectin isoform X11

  10. XM_051189168.1 → XP_051045125.1  plectin isoform X7

  11. XM_051189177.1 → XP_051045134.1  plectin isoform X15

  12. XM_051189170.1 → XP_051045127.1  plectin isoform X8

  13. XM_051189166.1 → XP_051045123.1  plectin isoform X5

  14. XM_051189172.1 → XP_051045129.1  plectin isoform X10

  15. XM_051189167.1 → XP_051045124.1  plectin isoform X6

Nucleotide Protein
Heading Accession and Version

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