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Ggta1 glycoprotein alpha-galactosyltransferase 1 (inactive) [ Phodopus roborovskii (desert hamster) ]

Gene ID: 127222824, updated on 24-Mar-2024

Summary

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Gene symbol
Ggta1
Gene description
glycoprotein alpha-galactosyltransferase 1 (inactive)
Locus tag
PHOROB_LOCUS6572
Gene type
protein coding
RefSeq status
MODEL
Organism
Phodopus roborovskii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Phodopus
Orthologs
human mouse all
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Genomic context

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See Ggta1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_02 current PHOROB (GCF_943737965.1) Unplaced Scaffold NW_026126418.1 (76303669..76377696, complement)

NW_026126418.1Genomic Context describing neighboring genes Neighboring gene N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1 Neighboring gene N-acetyllactosaminide alpha-1,3-galactosyltransferase Neighboring gene uncharacterized LOC127221940 Neighboring gene DAB2 interacting protein Neighboring gene tubulin tyrosine ligase like 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026126418 Unplaced Scaffold Reference PHOROB Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_943737965.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PHOROB Primary Assembly

Genomic

  1. NW_026126418.1 Reference PHOROB Primary Assembly

    Range
    76303669..76377696 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051185315.1 → XP_051041272.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X5

  2. XM_051185314.1 → XP_051041271.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X4

  3. XM_051185312.1 → XP_051041269.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X2

  4. XM_051185313.1 → XP_051041270.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X3

  5. XM_051185308.1 → XP_051041265.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X1

  6. XM_051185311.1 → XP_051041268.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X1

  7. XM_051185309.1 → XP_051041266.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X1

  8. XM_051185310.1 → XP_051041267.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X1

Nucleotide Protein
Heading Accession and Version

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