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Gbgt1 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) [ Phodopus roborovskii (desert hamster) ]

Gene ID: 127222675, updated on 24-Mar-2024

Summary

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Gene symbol
Gbgt1
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group)
Locus tag
PHOROB_LOCUS6446
Gene type
protein coding
RefSeq status
MODEL
Organism
Phodopus roborovskii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Phodopus
Orthologs
human mouse all
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Genomic context

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See Gbgt1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current PHOROB (GCF_943737965.1) Unplaced Scaffold NW_026126418.1 (69544341..69553412)

NW_026126418.1Genomic Context describing neighboring genes Neighboring gene piercer of microtubule wall 1 Neighboring gene mitochondrial ribosomal protein S2 Neighboring gene ral guanine nucleotide dissociation stimulator Neighboring gene carboxyl ester lipase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_026126418 Unplaced Scaffold Reference PHOROB Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables globoside alpha-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_943737965.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PHOROB Primary Assembly

Genomic

  1. NW_026126418.1 Reference PHOROB Primary Assembly

    Range
    69544341..69553412
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051184974.1 → XP_051040931.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

  2. XM_051184973.1 → XP_051040930.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

Nucleotide Protein
Heading Accession and Version

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