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col1a2 collagen, type I, alpha 2 [ Labeo rohita (rohu) ]

Gene ID: 127181701, updated on 10-Apr-2024

Summary

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Gene symbol
col1a2
Gene description
collagen, type I, alpha 2
Locus tag
H4Q32_006144
See related
EnsemblRapid:ENSLROG00010005023
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
Orthologs
human zebrafish all
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Genomic context

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See col1a2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
50
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 19 NC_066887.1 (17579845..17596211)

Chromosome 19 - NC_066887.1Genomic Context describing neighboring genes Neighboring gene zgc:85777 Neighboring gene guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 Neighboring gene Bet1 golgi vesicular membrane trafficking protein Neighboring gene uncharacterized LOC127181702 Neighboring gene CAS1 domain containing 1 Neighboring gene sarcoglycan, epsilon Neighboring gene protein phosphatase 1, regulatory subunit 9A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066887.1 Chromosome 19 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen type I trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-2(I) chain
Names
Collagen alpha-2(I) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066887.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    17579845..17596211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051136585.1 → XP_050992542.1  collagen alpha-2(I) chain isoform X2

    Related
    ENSLROP00010007844.1, ENSLROT00010009410.1

  2. XM_051136584.1 → XP_050992541.1  collagen alpha-2(I) chain isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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