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thbs1a thrombospondin 1a [ Labeo rohita (rohu) ]

Gene ID: 127179534, updated on 6-Jun-2024

Summary

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Gene symbol
thbs1a
Gene description
thrombospondin 1a
Locus tag
H4Q32_010645
See related
EnsemblRapid:ENSLROG00010022292
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
Orthologs
zebrafish all
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Genomic context

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See thbs1a in Genome Data Viewer
Location:
chromosome: 17
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 17 NC_066885.1 (402628..410709, complement)

Chromosome 17 - NC_066885.1Genomic Context describing neighboring genes Neighboring gene chromosome 17 C14orf28 homolog Neighboring gene fibrous sheath interacting protein 1 Neighboring gene uncharacterized LOC127180115 Neighboring gene uncharacterized LOC127180114 Neighboring gene acid phosphatase 7, tartrate resistant (putative)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066885.1 Chromosome 17 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thrombospondin-1
Names
Thrombospondin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066885.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    402628..410709 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051133114.1 → XP_050989071.1  thrombospondin-1

    UniProtKB/TrEMBL
    A0A498M5X4
    Related
    ENSLROP00010045691.1, ENSLROT00010049758.1
Nucleotide Protein
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