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shc1 SHC (Src homology 2 domain containing) transforming protein 1 [ Labeo rohita (rohu) ]

Gene ID: 127178036, updated on 11-Apr-2024

Summary

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Gene symbol
shc1
Gene description
SHC (Src homology 2 domain containing) transforming protein 1
See related
EnsemblRapid:ENSLROG00010008592
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
Orthologs
human zebrafish all
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Genomic context

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See shc1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 16 NC_066884.1 (20535239..20579243)

Chromosome 16 - NC_066884.1Genomic Context describing neighboring genes Neighboring gene ephrin A4 Neighboring gene flavin adenine dinucleotide synthetase 1 Neighboring gene lens epithelial protein Neighboring gene pre-B-cell leukemia homeobox interacting protein 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066884.1 Chromosome 16 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables receptor tyrosine kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SHC-transforming protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066884.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    20535239..20579243
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051130662.1 → XP_050986619.1  SHC-transforming protein 1 isoform X1

    Related
    ENSLROP00010015120.1, ENSLROT00010016858.1

  2. XM_051130664.1 → XP_050986621.1  SHC-transforming protein 1 isoform X3

    Related
    ENSLROP00010015128.1, ENSLROT00010016866.1

  3. XM_051130665.1 → XP_050986622.1  SHC-transforming protein 1 isoform X4

  4. XM_051130663.1 → XP_050986620.1  SHC-transforming protein 1 isoform X2

    Related
    ENSLROP00010015113.1, ENSLROT00010016851.1

  5. XM_051130661.1 → XP_050986618.1  SHC-transforming protein 1 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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