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LOC127176082 E3 ubiquitin-protein ligase XIAP-like [ Labeo rohita (rohu) ]

Gene ID: 127176082, updated on 10-Apr-2024

Summary

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Gene symbol
LOC127176082
Gene description
E3 ubiquitin-protein ligase XIAP-like
See related
EnsemblRapid:ENSLROG00010023257
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
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Genomic context

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See LOC127176082 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 14 NC_066882.1 (6109700..6117114)

Chromosome 14 - NC_066882.1Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, non-ATPase 10 Neighboring gene E3 ubiquitin-protein ligase XIAP-like Neighboring gene STAG2 cohesin complex component b Neighboring gene hyaluronan-mediated motility receptor (RHAMM)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066882.1 Chromosome 14 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase inhibitor activity involved in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase XIAP-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066882.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    6109700..6117114
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051127529.1 → XP_050983486.1  E3 ubiquitin-protein ligase XIAP-like isoform X1

    Related
    ENSLROP00010046564.1, ENSLROT00010050826.1

  2. XM_051127531.1 → XP_050983488.1  E3 ubiquitin-protein ligase XIAP-like isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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