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vcla vinculin a [ Labeo rohita (rohu) ]

Gene ID: 127174878, updated on 10-Apr-2024

Summary

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Gene symbol
vcla
Gene description
vinculin a
Locus tag
H4Q32_009220
See related
EnsemblRapid:ENSLROG00010017842
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
Also known as
Vinculin
Orthologs
zebrafish all
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Genomic context

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See vcla in Genome Data Viewer
Location:
chromosome: 13
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 13 NC_066881.1 (17953926..18011056, complement)

Chromosome 13 - NC_066881.1Genomic Context describing neighboring genes Neighboring gene adenosine kinase a Neighboring gene adaptor related protein complex 3 subunit mu 1 Neighboring gene plasminogen activator, urokinase a Neighboring gene component of inhibitor of nuclear factor kappa B kinase complex

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066881.1 Chromosome 13 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vinculin a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066881.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    17953926..18011056 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051125510.1 → XP_050981467.1  vinculin a isoform X2

    Related
    ENSLROP00010035368.1, ENSLROT00010038297.1

  2. XM_051125511.1 → XP_050981468.1  vinculin a isoform X3

  3. XM_051125509.1 → XP_050981466.1  vinculin a isoform X1

  4. XM_051125513.1 → XP_050981470.1  vinculin a isoform X5

    UniProtKB/TrEMBL
    A0A498NZL4
    Related
    ENSLROP00010035377.1, ENSLROT00010038312.1

  5. XM_051125512.1 → XP_050981469.1  vinculin a isoform X4

  6. XM_051125514.1 → XP_050981471.1  vinculin a isoform X6

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases