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itga3b integrin, alpha 3b [ Labeo rohita (rohu) ]

Gene ID: 127173940, updated on 10-Apr-2024

Summary

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Gene symbol
itga3b
Gene description
integrin, alpha 3b
Locus tag
H4Q32_016882
See related
EnsemblRapid:ENSLROG00010016132
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
Orthologs
human zebrafish all
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Genomic context

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See itga3b in Genome Data Viewer
Location:
chromosome: 12
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 12 NC_066880.1 (26247050..26298891)

Chromosome 12 - NC_066880.1Genomic Context describing neighboring genes Neighboring gene distal-less homeobox 4b Neighboring gene distal-less homeobox 3b Neighboring gene angiotensin-converting enzyme Neighboring gene angiotensin-converting enzyme

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066880.1 Chromosome 12 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leukocyte migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin alpha-3b
Names
Integrin alpha-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066880.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    26247050..26298891
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051124045.1 → XP_050980002.1  integrin alpha-3b isoform X2

  2. XM_051124043.1 → XP_050980000.1  integrin alpha-3b isoform X1

    Related
    ENSLROP00010032006.1, ENSLROT00010034611.1

  3. XM_051124044.1 → XP_050980001.1  integrin alpha-3b isoform X2

    Related
    ENSLROP00010031995.1, ENSLROT00010034600.1
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases