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col2a1b collagen, type II, alpha 1b [ Labeo rohita (rohu) ]

Gene ID: 127172797, updated on 10-Apr-2024

Summary

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Gene symbol
col2a1b
Gene description
collagen, type II, alpha 1b
See related
EnsemblRapid:ENSLROG00010005658
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
Orthologs
zebrafish all
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Genomic context

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See col2a1b in Genome Data Viewer
Location:
chromosome: 11
Exon count:
54
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 11 NC_066879.1 (9543060..9586060, complement)

Chromosome 11 - NC_066879.1Genomic Context describing neighboring genes Neighboring gene proline rich 13 Neighboring gene myg1 exonuclease Neighboring gene homeobox C13b Neighboring gene calcium binding and coiled-coil domain 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066879.1 Chromosome 11 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen type II trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen, type II, alpha 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066879.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    9543060..9586060 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051122202.1 → XP_050978159.1  collagen, type II, alpha 1b isoform X2

    Related
    ENSLROP00010009475.1, ENSLROT00010011093.1

  2. XM_051122201.1 → XP_050978158.1  collagen, type II, alpha 1b isoform X1

    Related
    ENSLROP00010009450.1, ENSLROT00010011068.1
Nucleotide Protein Strain
Heading Accession and Version

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