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pnpla4 patatin-like phospholipase domain containing 4 [ Labeo rohita (rohu) ]

Gene ID: 127170935, updated on 18-Sep-2024

Summary

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Gene symbol
pnpla4
Gene description
patatin-like phospholipase domain containing 4
Locus tag
H4Q32_005138
See related
EnsemblRapid:ENSLROG00010015668
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
Orthologs
human zebrafish all
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Genomic context

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See pnpla4 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 1 NC_066869.1 (28534259..28552537)

Chromosome 1 - NC_066869.1Genomic Context describing neighboring genes Neighboring gene neuroligin 4 X-linked a Neighboring gene pseudouridine 5'-phosphatase Neighboring gene steroid sulfatase (microsomal), isozyme S Neighboring gene anosmin 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066869.1 Chromosome 1 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables retinyl-palmitate esterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triacylglycerol lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lipid droplet IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patatin-like phospholipase domain-containing protein 4
Names
Patatin-like phospholipase domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066869.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    28534259..28552537
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051119285.1 → XP_050975242.1  patatin-like phospholipase domain-containing protein 4

    Related
    ENSLROP00010030696.1, ENSLROT00010033300.1
Nucleotide Protein
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Gene LinkOut

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