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pde9aa phosphodiesterase 9aa [ Labeo rohita (rohu) ]

Gene ID: 127170695, updated on 10-Apr-2024

Summary

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Gene symbol
pde9aa
Gene description
phosphodiesterase 9aa
Locus tag
H4Q32_008002
See related
EnsemblRapid:ENSLROG00010006674
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
Orthologs
human zebrafish all
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Genomic context

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See pde9aa in Genome Data Viewer
Location:
chromosome: 9
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 9 NC_066877.1 (6964398..6990042)

Chromosome 9 - NC_066877.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127171294 Neighboring gene solute carrier family 37 member 1 Neighboring gene uncharacterized LOC127170694 Neighboring gene WD repeat domain 4 Neighboring gene NADH:ubiquinone oxidoreductase subunit V3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066877.1 Chromosome 9 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-GMP phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cGMP catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cGMP-mediated signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
Names
High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066877.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    6964398..6990042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051118866.1 → XP_050974823.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X1

  2. XM_051118867.1 → XP_050974824.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X2

  3. XM_051118870.1 → XP_050974827.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X5

    Related
    ENSLROP00010010776.1, ENSLROT00010012396.1

  4. XM_051118868.1 → XP_050974825.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X3

    Related
    ENSLROP00010010788.1, ENSLROT00010012408.1

  5. XM_051118869.1 → XP_050974826.1  high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A isoform X4

Nucleotide Protein
Heading Accession and Version

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