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pxnb paxillin b [ Labeo rohita (rohu) ]

Gene ID: 127170116, updated on 10-Apr-2024

Summary

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Gene symbol
pxnb
Gene description
paxillin b
Locus tag
H4Q32_007732
See related
EnsemblRapid:ENSLROG00010005016
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
Also known as
Paxillin
Orthologs
zebrafish all
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Genomic context

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See pxnb in Genome Data Viewer
Location:
chromosome: 8
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 8 NC_066876.1 (33938043..33976345)

Chromosome 8 - NC_066876.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127170147 Neighboring gene cytosolic thiouridylase subunit 1 homolog (S. pombe) Neighboring gene GCN1 activator of EIF2AK4 Neighboring gene RAB35, member RAS oncogene family b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066876.1 Chromosome 8 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endothelial cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NAC-alpha domain-containing protein 1; paxillin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066876.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    33938043..33976345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051117904.1 → XP_050973861.1  NAC-alpha domain-containing protein 1 isoform X1

    Related
    ENSLROP00010007284.1, ENSLROT00010008813.1

  2. XM_051117905.1 → XP_050973862.1  NAC-alpha domain-containing protein 1 isoform X2

    Related
    ENSLROP00010007304.1, ENSLROT00010008834.1

  3. XM_051117906.1 → XP_050973863.1  paxillin isoform X3

    Related
    ENSLROP00010007308.1, ENSLROT00010008837.1

  4. XM_051117907.1 → XP_050973864.1  paxillin isoform X4

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases