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si:dkeyp-82a1.6 torsin-1A-interacting protein 1 [ Labeo rohita (rohu) ]

Gene ID: 127169946, updated on 24-Mar-2024

Summary

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Gene symbol
si:dkeyp-82a1.6
Gene description
torsin-1A-interacting protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
Orthologs
zebrafish all
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Genomic context

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See si:dkeyp-82a1.6 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 8 NC_066876.1 (22697191..22701652)

Chromosome 8 - NC_066876.1Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1 Neighboring gene uncharacterized LOC127169944 Neighboring gene uncharacterized LOC127170342 Neighboring gene HAUS augmin-like complex, subunit 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066876.1 Chromosome 8 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066876.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    22697191..22701652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051117649.1 → XP_050973606.1  torsin-1A-interacting protein 1

Nucleotide Protein Strain
Heading Accession and Version

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