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rapgef1a Rap guanine nucleotide exchange factor (GEF) 1a [ Labeo rohita (rohu) ]

Gene ID: 127169554, updated on 10-Apr-2024

Summary

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Gene symbol
rapgef1a
Gene description
Rap guanine nucleotide exchange factor (GEF) 1a
Locus tag
H4Q32_007578
See related
EnsemblRapid:ENSLROG00010025647
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
Orthologs
zebrafish all
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Genomic context

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See rapgef1a in Genome Data Viewer
Location:
chromosome: 8
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 8 NC_066876.1 (28610291..28649055)

Chromosome 8 - NC_066876.1Genomic Context describing neighboring genes Neighboring gene netrin-G2 Neighboring gene nucleolar protein 58-like Neighboring gene mediator complex subunit 27 Neighboring gene anaphase promoting complex subunit 7 Neighboring gene ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2a

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066876.1 Chromosome 8 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables guanyl-nucleotide exchange factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Ras protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rap guanine nucleotide exchange factor 1
Names
Rap guanine nucleotide exchange factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066876.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    28610291..28649055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051117015.1 → XP_050972972.1  rap guanine nucleotide exchange factor 1 isoform X1

    Related
    ENSLROP00010050913.1, ENSLROT00010055979.1

  2. XM_051117016.1 → XP_050972973.1  rap guanine nucleotide exchange factor 1 isoform X2

    Related
    ENSLROP00010050915.1, ENSLROT00010055981.1

  3. XM_051117017.1 → XP_050972974.1  rap guanine nucleotide exchange factor 1 isoform X3

    Related
    ENSLROP00010050916.1, ENSLROT00010055982.1
Nucleotide Protein
Heading Accession and Version

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