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ano5b anoctamin 5b [ Labeo rohita (rohu) ]

Gene ID: 127168447, updated on 10-Apr-2024

Summary

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Gene symbol
ano5b
Gene description
anoctamin 5b
Locus tag
H4Q32_001539
See related
EnsemblRapid:ENSLROG00010018626
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
Orthologs
zebrafish all
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Genomic context

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See ano5b in Genome Data Viewer
Location:
chromosome: 7
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 7 NC_066875.1 (30412734..30445895)

Chromosome 7 - NC_066875.1Genomic Context describing neighboring genes Neighboring gene anoctamin 9b Neighboring gene tumor suppressing subtransferable candidate 4 Neighboring gene solute carrier family 17 member 6b Neighboring gene growth arrest-specific 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066875.1 Chromosome 7 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chloride channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chloride transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anoctamin-5b
Names
Anoctamin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066875.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    30412734..30445895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051115326.1 → XP_050971283.1  anoctamin-5b isoform X3

  2. XM_051115324.1 → XP_050971281.1  anoctamin-5b isoform X1

    Related
    ENSLROP00010037930.1, ENSLROT00010041078.1

  3. XM_051115325.1 → XP_050971282.1  anoctamin-5b isoform X2

    Related
    ENSLROP00010037885.1, ENSLROT00010041033.1
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases