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chrna1 cholinergic receptor, nicotinic, alpha 1 (muscle) [ Labeo rohita (rohu) ]

Gene ID: 127167126, updated on 10-Apr-2024

Summary

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Gene symbol
chrna1
Gene description
cholinergic receptor, nicotinic, alpha 1 (muscle)
See related
EnsemblRapid:ENSLROG00010025209
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
Orthologs
human zebrafish all
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Genomic context

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See chrna1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 6 NC_066874.1 (7982567..7991426, complement)

Chromosome 6 - NC_066874.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 155b Neighboring gene WAS/WASL interacting protein family, member 1b Neighboring gene ATP synthase membrane subunit c locus 3b Neighboring gene lunapark, ER junction formation factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066874.1 Chromosome 6 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylcholine-gated monoatomic cation-selective channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chemical synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetylcholine receptor subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066874.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    7982567..7991426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051112964.1 → XP_050968921.1  acetylcholine receptor subunit alpha isoform X1

    Related
    ENSLROP00010050241.1, ENSLROT00010055065.1

  2. XM_051112965.1 → XP_050968922.1  acetylcholine receptor subunit alpha isoform X2

    Related
    ENSLROP00010050237.1, ENSLROT00010055061.1
Nucleotide Protein Strain
Heading Accession and Version

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