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itgb1a integrin, beta 1a [ Labeo rohita (rohu) ]

Gene ID: 127155652, updated on 10-Apr-2024

Summary

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Gene symbol
itgb1a
Gene description
integrin, beta 1a
Locus tag
H4Q32_020560
See related
EnsemblRapid:ENSLROG00010010355
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
Orthologs
human zebrafish all
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Genomic context

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See itgb1a in Genome Data Viewer
Location:
chromosome: 24
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 24 NC_066892.1 (28614767..28651176)

Chromosome 24 - NC_066892.1Genomic Context describing neighboring genes Neighboring gene par-3 family cell polarity regulator alpha, a Neighboring gene uncharacterized LOC127155580 Neighboring gene F-box/LRR-repeat protein 7 Neighboring gene neuropilin 1a Neighboring gene mediator complex subunit 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066892.1 Chromosome 24 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-X3-C chemokine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables collagen binding involved in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables fibronectin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables laminin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion mediated by integrin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-matrix adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of integrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
integrin beta-1a
Names
Integrin beta-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066892.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    28614767..28651176
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051098009.1 → XP_050953966.1  integrin beta-1a isoform X1

    Related
    ENSLROP00010020867.1, ENSLROT00010022991.1

  2. XM_051098010.1 → XP_050953967.1  integrin beta-1a isoform X2

    UniProtKB/TrEMBL
    A0A498L7U1
    Related
    ENSLROP00010020946.1, ENSLROT00010023070.1
Nucleotide Protein
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