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lama5 laminin, alpha 5 [ Labeo rohita (rohu) ]

Gene ID: 127154454, updated on 10-Apr-2024

Summary

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Gene symbol
lama5
Gene description
laminin, alpha 5
Locus tag
H4Q32_015940
See related
EnsemblRapid:ENSLROG00010008025
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
Orthologs
human zebrafish all
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Genomic context

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See lama5 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
69
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 23 NC_066891.1 (22505877..22580546, complement)

Chromosome 23 - NC_066891.1Genomic Context describing neighboring genes Neighboring gene oxysterol binding protein-like 2b Neighboring gene ADRM1 26S proteasome ubiquitin receptor Neighboring gene microtubule-associated protein, RP/EB family, member 1b Neighboring gene protein kinase C binding protein 1, like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066891.1 Chromosome 23 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laminin subunit alpha-5
Names
Laminin subunit alpha-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066891.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    22505877..22580546 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051095977.1 → XP_050951934.1  laminin subunit alpha-5 isoform X2

    Related
    ENSLROP00010015639.1, ENSLROT00010017549.1

  2. XM_051095975.1 → XP_050951932.1  laminin subunit alpha-5 isoform X1

    Related
    ENSLROP00010015611.1, ENSLROT00010017521.1
Nucleotide Protein
Heading Accession and Version

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