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capn2b calpain 2, (m/II) large subunit b [ Labeo rohita (rohu) ]

Gene ID: 127153354, updated on 10-Apr-2024

Summary

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Gene symbol
capn2b
Gene description
calpain 2, (m/II) large subunit b
See related
EnsemblRapid:ENSLROG00010005383
Gene type
protein coding
RefSeq status
MODEL
Organism
Labeo rohita
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Labeoninae; Labeonini; Labeo
Orthologs
zebrafish all
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Genomic context

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See capn2b in Genome Data Viewer
Location:
chromosome: 22
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_02 current IGBB_LRoh.1.0 (GCF_022985175.1) 22 NC_066890.1 (24405127..24419746)

Chromosome 22 - NC_066890.1Genomic Context describing neighboring genes Neighboring gene beta-1,3-galactosyltransferase 11 Neighboring gene calpain-2 catalytic subunit Neighboring gene calpain 1, (mu/I) large subunit b Neighboring gene mitochondrial ribosomal protein S28

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066890.1 Chromosome 22 Reference IGBB_LRoh.1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain 2, (m/II) large subunit b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022985175.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IGBB_LRoh.1.0 Primary Assembly

Genomic

  1. NC_066890.1 Reference IGBB_LRoh.1.0 Primary Assembly

    Range
    24405127..24419746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051094393.1 → XP_050950350.1  calpain 2, (m/II) large subunit b

    Related
    ENSLROP00010008070.1, ENSLROT00010009647.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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