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LINC03051 long intergenic non-protein coding RNA 3051 [ Homo sapiens (human) ]

Gene ID: 127138867, updated on 10-Oct-2023

Summary

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Official Symbol
LINC03051provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 3051provided by HGNC
Primary source
HGNC:HGNC:56330
See related
Ensembl:ENSG00000239268
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Lnc-LSAMP-1
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Genomic context

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See LINC03051 in Genome Data Viewer
Location:
3q13.32
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (117877368..117997579, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (120597167..120717408, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:117426868-117428067 Neighboring gene long intergenic non-protein coding RNA 2024 Neighboring gene uncharacterized LOC101926953 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14623 Neighboring gene NANOG hESC enhancer GRCh37_chr3:117506993-117507518 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:117716097-117716643 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:117828563-117829762 Neighboring gene uncharacterized LOC124909416 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20288 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20289 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:118198933-118199550 Neighboring gene uncharacterized LOC105374058

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Long non-coding RNA LSAMP-1 is down-regulated in non-small cell lung cancer and predicts a poor prognosis. Gong W, et al. Cancer Cell Int, 2022 May 6. PMID 35524253, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_182298.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026343, AC128684
    Related
    ENST00000665851.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    117877368..117997579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    120597167..120717408 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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