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CAMTA1-AS3 CAMTA1 antisense RNA 3 [ Homo sapiens (human) ]

Gene ID: 127138864, updated on 18-Dec-2023

Summary

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Official Symbol
CAMTA1-AS3provided by HGNC
Official Full Name
CAMTA1 antisense RNA 3provided by HGNC
Primary source
HGNC:HGNC:40854
See related
Ensembl:ENSG00000237365
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See CAMTA1-AS3 in Genome Data Viewer
Location:
1p36.31
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (7008376..7014279, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (6537232..6543142, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:6843880-6844556 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:6844557-6845231 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 177 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 178 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 179 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6868944-6869444 Neighboring gene CAMTA1 divergent transcript Neighboring gene uncharacterized LOC124903832 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:6927405-6928137 Neighboring gene calmodulin binding transcription activator 1 Neighboring gene ribosomal protein L37 pseudogene 9 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:6967713-6968438 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6969150-6969650 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6969651-6970151 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:6990406-6990906 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7011017-7011720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7016017-7016546 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:7016547-7017077 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:7017078-7017607 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 180 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 181 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 182 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7029419-7029919 Neighboring gene MPRA-validated peak33 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7039565-7040410 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 183 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:7086000-7087199 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:7109791-7110690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 89 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:7142559-7142729 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:7153467-7153661 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7209665-7210272 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7234210-7234710 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:7237955-7238455 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7284388-7284888 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7284889-7285389 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7305529-7306030 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7344591-7345092 Neighboring gene RNA, U1 small nuclear 8, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7354235-7354752 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:7377679-7378878 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:7395955-7396832 Neighboring gene CAMTA1 intronic transcript 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Novel Necroptosis-Related lncRNA Signature for Osteosarcoma. Zheng Y, et al. Comput Math Methods Med, 2022. PMID 35844445, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

General gene information

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Clone Names

  • AL512330.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_182292.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL512330
    Related
    ENST00000456701.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    7008376..7014279 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    6537232..6543142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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