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LOC127119460 hydroxyproline O-galactosyltransferase GALT6-like [ Pisum sativum (garden pea) ]

Gene ID: 127119460, updated on 23-Nov-2023

Summary

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Gene symbol
LOC127119460
Gene description
hydroxyproline O-galactosyltransferase GALT6-like
Locus tag
KIW84_023440
Gene type
protein coding
RefSeq status
MODEL
Organism
Pisum sativum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Fabeae; Pisum
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Genomic context

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See LOC127119460 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
100 current CAAS_Psat_ZW6_1.0 (GCF_024323335.1) 2 NC_066580.1 (349678730..349683349)

Chromosome 2 - NC_066580.1Genomic Context describing neighboring genes Neighboring gene acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic-like Neighboring gene uncharacterized LOC127121410 Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like Neighboring gene formin-like protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066580.1 Chromosome 2 Reference CAAS_Psat_ZW6_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT6-like
Names
Hydroxyproline O-galactosyltransferase galt6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pisum sativum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Psat_ZW6_1.0

Genomic

  1. NC_066580.1 Reference CAAS_Psat_ZW6_1.0

    Range
    349678730..349683349
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051049695.1 → XP_050905652.1  hydroxyproline O-galactosyltransferase GALT6-like

    UniProtKB/TrEMBL
    A0A9D4YCZ3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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