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LOC127117839 hydroxyproline O-arabinosyltransferase NOD3 [ Pisum sativum (garden pea) ]

Gene ID: 127117839, updated on 10-Oct-2024

Summary

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Gene symbol
LOC127117839
Gene description
hydroxyproline O-arabinosyltransferase NOD3
Locus tag
KIW84_020555
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Pisum sativum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Fabeae; Pisum
Also known as
NOD3; PsNOD3
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Genomic context

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See LOC127117839 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
100 current CAAS_Psat_ZW6_1.0 (GCF_024323335.1) 2 NC_066580.1 (28418342..28421740)

Chromosome 2 - NC_066580.1Genomic Context describing neighboring genes Neighboring gene AT-hook motif nuclear-localized protein 28-like Neighboring gene extensin-like Neighboring gene small nucleolar RNA R71 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066580.1 Chromosome 2 Reference CAAS_Psat_ZW6_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The ROOT DETERMINED NODULATION1 gene regulates nodule number in roots of Medicago truncatula and defines a highly conserved, uncharacterized plant gene family. Schnabel EL, et al. Plant Physiol, 2011 Sep. PMID 21742814, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-arabinosyltransferase NOD3
Names
Protein NODULATION 3
variant 2, Hydroxyproline O-arabinosyltransferase nod3
XP_050903913.1
XP_050903914.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427339.1 → NP_001414268.1  hydroxyproline O-arabinosyltransferase NOD3

    Status: VALIDATED

    Source sequence(s)
    GEZC01063140, GEZC01063166, GHVW02000663, GU580939, JAMSHJ010000002
    UniProtKB/TrEMBL
    A0A9D4Y6P1

RefSeqs of Annotated Genomes: Pisum sativum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Psat_ZW6_1.0

Genomic

  1. NC_066580.1 Reference CAAS_Psat_ZW6_1.0

    Range
    28418342..28421740
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051047957.1 → XP_050903914.1  hydroxyproline O-arabinosyltransferase NOD3

    UniProtKB/TrEMBL
    A0A9D4Y6P1

  2. XM_051047956.1 → XP_050903913.1  hydroxyproline O-arabinosyltransferase NOD3

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
E9KID3.1 GenPept UniProtKB/Swiss-Prot:E9KID3

Gene LinkOut

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