U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC127094458 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like [ Pisum sativum (garden pea) ]

Gene ID: 127094458, updated on 10-Oct-2024

Summary

Go to the top of the page Help
Gene symbol
LOC127094458
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like
Locus tag
KIW84_010040
Gene type
protein coding
RefSeq status
MODEL
Organism
Pisum sativum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Fabeae; Pisum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC127094458 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
19
Annotation release Status Assembly Chr Location
100 current CAAS_Psat_ZW6_1.0 (GCF_024323335.1) 1 NC_066579.1 (1048716..1076290)

Chromosome 1 - NC_066579.1Genomic Context describing neighboring genes Neighboring gene glycine-rich cell wall structural protein 2-like Neighboring gene putative glycine-rich cell wall structural protein 1 Neighboring gene uncharacterized LOC127086477 Neighboring gene trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM1-like Neighboring gene lectin 5-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_066579.1 Chromosome 1 Reference CAAS_Psat_ZW6_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like
Names
Trehalose-6-P synthase/phosphatase complex synthase subunit
variant 2, Trehalose-6-P synthase/phosphatase complex synthase subunit
variant 3, Trehalose-6-P synthase/phosphatase complex synthase subunit

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pisum sativum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Psat_ZW6_1.0

Genomic

  1. NC_066579.1 Reference CAAS_Psat_ZW6_1.0

    Range
    1048716..1076290
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051034003.1 → XP_050889960.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1

    UniProtKB/TrEMBL
    A0A9D5BB05

  2. XM_051034439.1 → XP_050890396.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1

    UniProtKB/TrEMBL
    A0A9D5BB05

  3. XM_051035386.1 → XP_050891343.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X3

  4. XM_051033537.1 → XP_050889494.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1

    UniProtKB/TrEMBL
    A0A9D5BB05

  5. XM_051034878.1 → XP_050890835.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X2

    UniProtKB/TrEMBL
    A0A9D5BDR1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases