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LOC127079695 callose synthase 5 [ Pisum sativum (garden pea) ]

Gene ID: 127079695, updated on 23-Nov-2023

Summary

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Gene symbol
LOC127079695
Gene description
callose synthase 5
Locus tag
KIW84_051999
Gene type
protein coding
RefSeq status
MODEL
Organism
Pisum sativum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Fabeae; Pisum
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Genomic context

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See LOC127079695 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
42
Annotation release Status Assembly Chr Location
100 current CAAS_Psat_ZW6_1.0 (GCF_024323335.1) 5 NC_066583.1 (155351176..155365041, complement)

Chromosome 5 - NC_066583.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127079678 Neighboring gene BTB/POZ domain-containing protein At2g13690 Neighboring gene small nucleolar RNA J33 Neighboring gene mitogen-activated protein kinase kinase kinase 3-like Neighboring gene uncharacterized LOC127079716

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_066583.1 Chromosome 5 Reference CAAS_Psat_ZW6_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 5
Names
variant 2, Callose synthase 5
variant 3, Callose synthase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pisum sativum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAAS_Psat_ZW6_1.0

Genomic

  1. NC_066583.1 Reference CAAS_Psat_ZW6_1.0

    Range
    155351176..155365041 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_051020076.1 → XP_050876033.1  callose synthase 5

Nucleotide Protein
Heading Accession and Version

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