U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SPTLC2 serine palmitoyltransferase long chain base subunit 2 [ Gymnogyps californianus (California condor) ]

Gene ID: 127016566, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
SPTLC2
Gene description
serine palmitoyltransferase long chain base subunit 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gymnogyps californianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Accipitrimorphae; Accipitriformes; Cathartidae; Gymnogyps
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SPTLC2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_02 current ASM1813914v2 (GCF_018139145.2) 5 NC_059475.1 (46780445..46858443, complement)

Chromosome 5 - NC_059475.1Genomic Context describing neighboring genes Neighboring gene activator of HSP90 ATPase activity 1 Neighboring gene isthmin 2 Neighboring gene alkB homolog 1, histone H2A dioxygenase Neighboring gene SRA stem-loop interacting RNA binding protein Neighboring gene SNW domain containing 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_059475.1 Chromosome 5 Reference ASM1813914v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
serine palmitoyltransferase 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_018139145.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1813914v2

Genomic

  1. NC_059475.1 Reference ASM1813914v2

    Range
    46780445..46858443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_050897149.1 → XP_050753106.1  serine palmitoyltransferase 2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.