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CAPN3 calpain 3 [ Gymnogyps californianus (California condor) ]

Gene ID: 127016432, updated on 3-Aug-2024

Summary

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Gene symbol
CAPN3
Gene description
calpain 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Gymnogyps californianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Accipitrimorphae; Accipitriformes; Cathartidae; Gymnogyps
Orthologs
human mouse all
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Genomic context

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See CAPN3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2023_02 current ASM1813914v2 (GCF_018139145.2) 5 NC_059475.1 (30260311..30291633)

Chromosome 5 - NC_059475.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A Neighboring gene glucosidase alpha, neutral C Neighboring gene zinc finger protein 106 Neighboring gene synaptosome associated protein 23

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059475.1 Chromosome 5 Reference ASM1813914v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_018139145.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1813914v2

Genomic

  1. NC_059475.1 Reference ASM1813914v2

    Range
    30260311..30291633
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_050896936.1 → XP_050752893.1  calpain-3 isoform X4

  2. XM_050896933.1 → XP_050752890.1  calpain-3 isoform X1

  3. XM_050896934.1 → XP_050752891.1  calpain-3 isoform X2

  4. XM_050896935.1 → XP_050752892.1  calpain-3 isoform X3

  5. XM_050896937.1 → XP_050752894.1  calpain-3 isoform X5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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