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SYNJ2 synaptojanin 2 [ Gymnogyps californianus (California condor) ]

Gene ID: 127014804, updated on 3-Aug-2024

Summary

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Gene symbol
SYNJ2
Gene description
synaptojanin 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gymnogyps californianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Accipitrimorphae; Accipitriformes; Cathartidae; Gymnogyps
Orthologs
human mouse all
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Genomic context

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See SYNJ2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_02 current ASM1813914v2 (GCF_018139145.2) 3 NC_059473.1 (59871652..59942168)

Chromosome 3 - NC_059473.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127014678 Neighboring gene sorting nexin 9 Neighboring gene serine active site containing 1 Neighboring gene general transcription factor IIH subunit 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_059473.1 Chromosome 3 Reference ASM1813914v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_018139145.2-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1813914v2

Genomic

  1. NC_059473.1 Reference ASM1813914v2

    Range
    59871652..59942168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_050894399.1 → XP_050750356.1  synaptojanin-2 isoform X1

  2. XM_050894400.1 → XP_050750357.1  synaptojanin-2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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