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SYNJ1 synaptojanin 1 [ Macaca thibetana thibetana ]

Gene ID: 126951678, updated on 24-Mar-2024

Summary

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Gene symbol
SYNJ1
Gene description
synaptojanin 1
See related
EnsemblRapid:ENSMTBG00000028659
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca thibetana thibetana (sub-species: thibetana)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SYNJ1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
36
Annotation release Status Assembly Chr Location
RS_2023_02 current ASM2454274v1 (GCF_024542745.1) 3 NC_065580.1 (164201397..164303425)

Chromosome 3 - NC_065580.1Genomic Context describing neighboring genes Neighboring gene PAX3 and PAX7 binding protein 1 Neighboring gene uncharacterized LOC126951676 Neighboring gene cilia and flagella associated protein 298 Neighboring gene uncharacterized LOC126951682

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_065580.1 Chromosome 3 Reference ASM2454274v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_024542745.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2454274v1

Genomic

  1. NC_065580.1 Reference ASM2454274v1

    Range
    164201397..164303425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_050786007.1 → XP_050641964.1  synaptojanin-1 isoform X1

    Related
    ENSMTBP00000039731.1, ENSMTBT00000049303.1

  2. XM_050786008.1 → XP_050641965.1  synaptojanin-1 isoform X2

  3. XM_050786012.1 → XP_050641969.1  synaptojanin-1 isoform X4

    Related
    ENSMTBP00000039723.1, ENSMTBT00000049286.1

  4. XM_050786018.1 → XP_050641975.1  synaptojanin-1 isoform X9

    Related
    ENSMTBP00000039736.1, ENSMTBT00000049313.1

  5. XM_050786011.1 → XP_050641968.1  synaptojanin-1 isoform X3

  6. XM_050786026.1 → XP_050641983.1  synaptojanin-1 isoform X16

    Related
    ENSMTBP00000039702.1, ENSMTBT00000049251.1

  7. XM_050786013.1 → XP_050641970.1  synaptojanin-1 isoform X5

  8. XM_050786015.1 → XP_050641972.1  synaptojanin-1 isoform X7

    Related
    ENSMTBP00000039713.1, ENSMTBT00000049272.1

  9. XM_050786017.1 → XP_050641974.1  synaptojanin-1 isoform X8

  10. XM_050786014.1 → XP_050641971.1  synaptojanin-1 isoform X6

  11. XM_050786019.1 → XP_050641976.1  synaptojanin-1 isoform X10

  12. XM_050786021.1 → XP_050641978.1  synaptojanin-1 isoform X11

  13. XM_050786024.1 → XP_050641981.1  synaptojanin-1 isoform X14

  14. XM_050786025.1 → XP_050641982.1  synaptojanin-1 isoform X15

    Related
    ENSMTBP00000039680.1, ENSMTBT00000049208.1

  15. XM_050786022.1 → XP_050641979.1  synaptojanin-1 isoform X12

    Related
    ENSMTBP00000039695.1, ENSMTBT00000049238.1

  16. XM_050786020.1 → XP_050641977.1  synaptojanin-1 isoform X10

  17. XM_050786009.1 → XP_050641966.1  synaptojanin-1 isoform X2

  18. XM_050786010.1 → XP_050641967.1  synaptojanin-1 isoform X2

  19. XM_050786023.1 → XP_050641980.1  synaptojanin-1 isoform X13

Nucleotide Protein
Heading Accession and Version

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