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LOC126863096 BRD4-independent group 4 enhancer GRCh37_chr22:18552873-18554072 [ Homo sapiens (human) ]

Gene ID: 126863096, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126863096
Gene description
BRD4-independent group 4 enhancer GRCh37_chr22:18552873-18554072
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 4 enhancer that depends on the BRD2, P300/CBP, MED14 and CDK7 cofactors, but it has limited or no dependence on the BRD4 bromodomain protein. [provided by RefSeq, Sep 2022]
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Genomic context

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See LOC126863096 in Genome Data Viewer
Location:
chromosome: 22
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (18070107..18071306)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (18741528..18742727)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13446 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18645 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18646 Neighboring gene long intergenic non-protein coding RNA 1634 Neighboring gene RHEB pseudogene 3 Neighboring gene uncharacterized LOC105372853 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:18544003-18544503 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13447 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18647 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13448 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18648 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18649 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:18564135-18564340 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18650 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18651 Neighboring gene H3K27ac hESC enhancer GRCh37_chr22:18588685-18589186 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13449 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18652 Neighboring gene peroxisomal biogenesis factor 26 Neighboring gene ADP ribosylation factor like GTPase 2 binding protein pseudogene 10 Neighboring gene tubulin alpha 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_087592.1 

    Range
    101..1300
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    18070107..18071306
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    18741528..18742727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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