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LOC126863043 CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:46893650-46894849 [ Homo sapiens (human) ]

Gene ID: 126863043, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126863043
Gene description
CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:46893650-46894849
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 2 enhancer that depends on the BRD2, BRD4, P300/CBP, MED14 and CDK7 cofactors, with strong dependence on CDK7. [provided by RefSeq, Sep 2022]
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Genomic context

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Location:
chromosome: 20
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (48264907..48266106)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (50033715..50034914)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372640 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:46754717-46755602 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:46803778-46804278 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:46804279-46804779 Neighboring gene uncharacterized LOC105372641 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46833156-46833688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46834755-46835286 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr20:46842063-46842887 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:46857183-46857312 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46870479-46870978 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46888828-46889328 Neighboring gene NANOG hESC enhancer GRCh37_chr20:46895251-46895778 Neighboring gene uncharacterized LOC124904924 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:46921157-46921901 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:46923391-46924136 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:46924137-46924880 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:46924881-46925625 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46948811-46949389 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18014 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18015 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18016 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18017 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:46979410-46979659 Neighboring gene long intergenic non-protein coding RNA 494

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_087540.1 

    Range
    101..1300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    48264907..48266106
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    50033715..50034914
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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