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LOC126862327 P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:29166386-29167585 [ Homo sapiens (human) ]

Gene ID: 126862327, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126862327
Gene description
P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:29166386-29167585
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 1 enhancer that depends on the BRD2, BRD4, P300/CBP, MED14 and CDK7 cofactors, with strong dependence on P300/CBP. [provided by RefSeq, Sep 2022]
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Genomic context

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See LOC126862327 in Genome Data Viewer
Location:
chromosome: 16
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (29155065..29156264)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (29436307..29437479)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene RRN3 pseudogene 2 Neighboring gene uncharacterized LOC101928215 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29126448-29126996 Neighboring gene uncharacterized LOC124903671 Neighboring gene uncharacterized LOC100129184 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29141163-29141951 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29145325-29145825 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29155082-29155768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29155769-29156455 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29163489-29164159 Neighboring gene Sharpr-MPRA regulatory region 414 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29177699-29178199 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:29196056-29197255 Neighboring gene RRN3P2-SNX29P2 intergenic nontranscribed DNase I hypersensitive site-defined enhancer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29203636-29204362 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29209784-29210284 Neighboring gene Sharpr-MPRA regulatory region 8859 Neighboring gene uncharacterized LOC101928188 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:29232263-29232832 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:29233140-29233640 Neighboring gene uncharacterized LOC102723708

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_086825.1 

    Range
    101..1300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    29155065..29156264
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    29436307..29437479
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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