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LOC126861687 CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:130091629-130092828 [ Homo sapiens (human) ]

Gene ID: 126861687, updated on 10-Oct-2023

Summary

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Gene symbol
LOC126861687
Gene description
CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:130091629-130092828
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 2 enhancer that depends on the BRD2, BRD4, P300/CBP, MED14 and CDK7 cofactors, with strong dependence on CDK7. [provided by RefSeq, Sep 2022]
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Genomic context

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Location:
chromosome: 12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (129607084..129608283)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (129639066..129640265)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene transmembrane protein 132D Neighboring gene tRNA-Ile (anticodon AAT) 11-1 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:129818221-129818407 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:129820840-129821772 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:129821773-129822705 Neighboring gene Neanderthal introgressed variant-containing enhancers experimental_25486 and experimental_25487 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_25513 Neighboring gene uncharacterized LOC105370074 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130037777-130038276 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:130184278-130184778 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:130255581-130256164 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:130256165-130256748 Neighboring gene NANOG hESC enhancer GRCh37_chr12:130312018-130312519 Neighboring gene uncharacterized LOC124903085 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:130337885-130339084 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:130356309-130357280 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:130382881-130383382 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_25552 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_25563 Neighboring gene uncharacterized LOC105370076

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_086185.1 

    Range
    101..1300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    129607084..129608283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    129639066..129640265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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